PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-other
Protein Properties Length: 299aa    MW: 33668.1 Da    PI: 7.6379
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274554genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.83.7e-1336751857
                   HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                   lF +++yp++e++ +LA+ l+L+e+q++ WF+ rR k+k+
  MDP0000274554 36 LFPEHKYPTEEMKSQLAEXLRLSEKQISGWFCHRRLKDKR 75
                   6999**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000865.22E-102675No hitNo description
SMARTSM003892.2E-52780IPR001356Homeobox domain
PfamPF000461.2E-103675IPR001356Homeobox domain
PROSITE profilePS5007113.2323776IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-133775IPR009057Homeodomain-like
SuperFamilySSF466893.42E-113783IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALEKFYNGK DASLRVCFVF LSFEXSNFSK ECSFLLFPEH KYPTEEMKSQ LAEXLRLSEK  60
QISGWFCHRR LKDKRLSRDE TQANGRQDRS SVVIQDRASG LGQDSCGSTK HGEHRFVDPR  120
EVESRRLSGH DFTSADITRE YRSHYTERVG DMDNTSSESS SSLQDRLLTR KEDPYDVETS  180
RYLTHTKGME NMGYKPSGFM KVKGEAENAA ITAVKRQLGR QYWEDGPLLG VEFDLLPRGA  240
FESPIIGSGH EPSTIGNTVL RSPDISGVKG QLSPSTVSRP NAFLLHFDRS GVGKGVTTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.58870.0cell culture| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375850.10.0PREDICTED: uncharacterized protein LOC103439076
RefseqXP_008391024.10.0PREDICTED: uncharacterized protein LOC103453257
TrEMBLM5WMQ71e-140M5WMQ7_PRUPE; Uncharacterized protein
STRINGGLYMA14G03850.11e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.19e-68HB-other family protein